山东科学 ›› 2023, Vol. 36 ›› Issue (6): 48-55.doi: 10.3976/j.issn.1002-4026.2023.06.007

• 药理与毒理 • 上一篇    下一篇

基于网络药理学和分子对接技术探究地胆草治疗溃疡性结肠炎的作用机制

慕娜娜(), 廖彬彬, 李镇, 李吉品, 李伊花, 王莹, 陈旭冰()   

  1. 大理大学 药学院,云南 大理 671000
  • 收稿日期:2023-01-06 出版日期:2023-12-20 发布日期:2023-12-07
  • 通信作者: * 陈旭冰(1978—),女,副教授,研究方向为天然药物研究与开发。Tel:13619420716,E-mail:abing780113@163.com
  • 作者简介:慕娜娜(1996—),女,硕士研究生,研究方向为天然药物研究与开发。E-mail:dxy3660@163.com
  • 基金资助:
    国家自然科学基金云南联合基金重点项目(U2102201)

Investigating the mechanism of action of Elephantopus scaber L. in the treatment of ulcerative colitis based on network pharmacology and molecular docking

MU Nana(), LIAO Binbin, LI Zhen, LI Jipin, LI Yihua, WANG Ying, CHEN Xubing()   

  1. College of Pharmacy, Dali University, Dali 671000, China
  • Received:2023-01-06 Online:2023-12-20 Published:2023-12-07

摘要:

基于网络药理学和分子对接技术,研究地胆草治疗溃疡性结肠炎(ulcerative colitis,UC)的分子机制。根据文献调研确定地胆草的化学成分,利用SwissADME数据库筛选活性成分、SwissTargetPrediction数据库预测其作用靶点。通过GeneCards、Disgenet、PharmGKB和TTD数据库获取UC的相关靶点,并进行拓扑分析,采用Metascape数据库对候选靶点进行GO (gene ontology)功能和KEGG(Kyoto encyclopedia of genes and genomes )生物通路富集分析,最后结合RCSB PDB数据库及Chemdraw、PyMoL、AutoDock 4.2.6对核心成分和关键靶点进行分子对接验证并进行可视化分析。从地胆草中筛选出34个调控UC的潜在靶点,对关键靶点作GO功能和KEGG通路富集分析,显示地胆草可能通过对系统过程的调节、外部刺激反应的负面调节、凋亡信号通路的调节以及机械刺激的反应等生物学过程调节MAPK3、PIK3CA、STAT3和JAK2等关键靶点的表达,从而参与调控癌症信号通路、PI3K-Akt信号通路、NF-κB信号通路、幽门螺旋杆菌感染的上皮细胞信号传导和钙信号传导通路等多个KEGG信号通路,从而达到治疗UC的目的。分子对接结果显示,各活性成分与关键靶点的亲和力较好。研究认为地胆草治疗UC的作用机制可能与抑制 MAPK3、PIK3CA、STAT3 等靶点的表达,缓解结肠组织炎症反应有关。

关键词: 地胆草, 溃疡性结肠炎, 网络药理学, 分子对接

Abstract:

Investigating the molecular mechanism of Elephantopus scaber L. in the treatment of ulcerative colitis (UC) based on network pharmacology and molecular docking techniques. The chemical composition of Elephantopus scaber L. was determined based on literature research, the active ingredients were screened using the SwissADME database, and the targets were predicted by SwissTargetPrediction database. The GeneCards, Disgenet, PharmGKB, and TTD databases were used to obtain the relevant targets for UC, and the topological analysis was performed. The Metascape database was used to perform Gene Ontology (GO) function and Kyoto Encyclopedia of Genes and Genomes (KEGG) was used for biological pathway enrichment analysis on the candidate targets. In addition, the RCSB PDB database and Chemdraw, PyMoL, AutoDock 4.2.6 was used for molecular docking validation and visualization of core components and key targets. 34 potential targets were screened out, and GO function and KEGG pathway enrichment analysis were performed on the key targets. The results showed that Elephantopus scaber L. can regulate systemic processes, negatively regulate the response to external stimuli, and regulate apoptosis signaling pathways. MAPK3, PIK3CA, STAT3, and JAK2 are regulated by biological processes such as responses to mechanical stimuli. Therefore it participates in the regulation of various KEGG signaling pathways, such as cancer signaling pathway, PI3K-Akt signaling pathway, NF-κB signaling pathway, Helicobacter pylori infection epithelial cell signaling pathway, calcium signaling pathway, etc. to treat UC.The molecular docking results showed that each active ingredient had good affinity to the key targets. The mechanism of Elephantopus scaber L. in treating UC may be related to inhibiting the expression of MAPK3, PIK3CA, STAT3 and other targets, and relieving the inflammatory reaction of colon tissue.

Key words: Elephantopus scaber L., ulcerative colitis, network pharmacology, molecular docking

中图分类号: 

  • P41